Polymorphisms in the Leptin and SCD genes in Buffaloes of the Amazon

Authors

DOI:

https://doi.org/10.33448/rsd-v10i13.21222

Keywords:

Bubalus bubalis; Genotype; Milk; SNP.

Abstract

The objective this work was to evaluate genetically the buffaloes populations using polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) in the leptin and stearoyl-CoA desaturase (SCD) genes, and associate the genotypes with milk production. Sixty-nine samples of Bubalus bubalis - 38 Murrah breed, 18 Mediterranean and 13 mixed-breed of the Murrah with Mediterranean - were evaluated. Allele and genotype frequencies, the heterozygosity observed and expected, the inbreeding coefficients (FIS), the probabilities of the Hardy-Weinberg equilibrium, the F statistic for population differentiation and Shannon index were calculated using GENEPOP and GenALEx programs. The associations of the different genotypes with a role in milk production were tested by Analysis of Variance (ANOVA) and t-test. We reported the leptin and SCD allele contribution to genetic variability in buffaloes herds in the Brazilian Amazonian region. The A allele was more representative in leptin and SCD genes for all breed groups. No significant effects between genotypes and milk production were found in the present study, but there is an indicative that AA genotype in leptin gene affects milk production in Murrah breed.

References

Araújo, K. B., Rangel, A. H., Fonseca, F. C., Aguiar, E. M., Simplício, A. A., Novaes, L. P., & Júnior, D. M. L. (2012). Influence of the year and calving season on production, composition and mozzarella cheese yield of water buffalo in the State of Rio Grande do Norte, Brazil. Italian Journal of Animal Science, 11(1), e16.

Machado, E. B., Souza, B. B., Guimarães, R. C., Azevedo, J. S. N., Gonçalves, E. C., Ribeiro, H. F. L. & ... Filho, E. S. (2016). Polymorphism in the melatonin receptor gene in buffalo populations of the Brazilian Amazon. Genetics and Molecular Research 15, 1-6.

Bartha, T., Sayed-Ahmed, A., & Rudas, P. (2005). Expression of leptin and its receptors in various tissues of ruminants. Domestic animal endocrinology, 29(1), 193-202.

Bhattacharya, A., Banu, J., Rahman, M., Causey, J., & Fernandes, G. (2006). Biological effects of conjugated linoleic acids in health and disease. The Journal of nutritional biochemistry, 17(12), 789-810.

Food and Agriculture Organization. (2003). World agriculture: towards 2015/2030: an FAO perspective. FAO.

Dubey, A., Kant, S., Agarwal, S., Dixit, S., Mahadi, A. A., & Tiwari, S. (2014). A study on association of leptin receptor gene polymorphism with obstructive sleep apnea syndrome in overweight and obese north Indian subjects. Indian journal of physiology and pharmacology, 58(3), 222-228.

Feuermann, Y., Mabjeesh, S. J., & Shamay, A. (2009). Mammary fat can adjust prolactin effect on mammary epithelial cells via leptin and estrogen. International journal of endocrinology, 2009, 1-8.

Gu, M., Cosenza, G., Iannaccone, M., Macciotta, N. P. P., Guo, Y., Di Stasio, L., & Pauciullo, A. (2019). The single nucleotide polymorphism g. 133A> C in the stearoyl CoA desaturase gene (SCD) promoter affects gene expression and quali-quantitative properties of river buffalo milk. Journal of dairy science, 102(1), 442-451.

Hu, X., Juneja, S. C., Maihle, N. J., & Cleary, M. P. (2002). Leptin—a growth factor in normal and malignant breast cells and for normal mammary gland development. Journal of the National Cancer Institute, 94(22), 1704-1711.

IBGE (Brazilian Institute of Geography and Statistics) (2016). Produção da pecuária municipal, Rio de Janeiro, 44: 1-51.

Kassambara, A., & Kassambara, M. A. (2020). Package ‘ggpubr’.

Kininis, M., & Kraus, W. L. (2008). A global view of transcriptional regulation by nuclear receptors: gene expression, factor localization, and DNA sequence analysis. Nuclear receptor signaling, 6(1), nrs-06005.

Malpaux, B., Migaud, M., Tricoire, H., & Chemineau, P. (2001). Biology of mammalian photoperiodism and the critical role of the pineal gland and melatonin. Journal of biological rhythms, 16(4), 336-347.

McWilliam, H., Li, W., Uludag, M., Squizzato, S., Park, Y. M., Buso, N. & Lopez, R. (2013). Analysis tool web services from the EMBL-EBI. Nucleic acids research, 41(W1), W597-W600.

Naserkheil, M., Miraie-Ashtiani, S. R., Sadeghi, M., Nejati-Javaremi, A., Park, C. W., Min, K. S., & Lee, D. (2019). Exploring novel single nucleotide polymorphisms and haplotypes of the diacylglycerol O-acyltransferase 1 (DGAT1) gene and their effects on protein structure in Iranian buffalo. Genes & genomics, 41(11), 1265-1271.

Nasr, M. A. F., Awad, A., & El Araby, I. E. (2016). Associations of leptin and pituitary‐specific transcription factor genes’ polymorphisms with reproduction and production traits in dairy buffalo. Reproduction in Domestic Animals, 51(4), 597-603.

Pauciullo, A., Cosenza, G., D’avino, A., Colimoro, L., Nicodemo, D., Coletta, A., ... & Ramunno, L. (2010). Sequence analysis and genetic variability of stearoyl CoA desaturase (SCD) gene in the Italian Mediterranean river buffalo. Molecular and Cellular Probes, 24(6), 407-410.

Pauciullo, A., Cosenza, G., Steri, R., Coletta, A., La Battaglia, A., Di Berardino, D., ... & Ramunno, L. (2012). A single nucleotide polymorphism in the promoter region of river buffalo stearoyl CoA desaturase gene (SCD) is associated with milk yield. Journal of dairy research, 79(4), 429-435.

Peakall, R. & Smouse, P.E. (2012). GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update. Bioinformatics.; 28: 2537-2539.

Raymond, M. (1995). Population genetics software for exact test and ecumenicism. J Heredity, 86, 248-249.

Rosales, F.P, & Batalha, M.O. (2013). Coordination of the chain of buffalo milk in São Paulo State (Brazil). Buffalo Bulletin.; 32: 1200-1203.

Safari, A., Hossein-Zadeh, N. G., Shadparvar, A. A., & Arpanahi, R. A. (2018). A review on breeding and genetic strategies in Iranian buffaloes (Bubalus bubalis). Tropical animal health and production, 50(4), 707-714.

Sambrook, J., Fritsch, E. F., & Maniatis, T. (1989). Molecular cloning: a laboratory manual (No. Ed. 2). Cold spring harbor laboratory press.

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Published

10/10/2021

How to Cite

SILVA, C. S.; SILVA FILHO, E. da; SILVA, L. K. N. da; FERRAZ, R. S.; MATOS, A. de S.; MARQUES, L. C. .; SALES, R. L. .; GUIMARÃES, D. A. de A.; MARQUES, J. R. F. . Polymorphisms in the Leptin and SCD genes in Buffaloes of the Amazon. Research, Society and Development, [S. l.], v. 10, n. 13, p. e233101321222, 2021. DOI: 10.33448/rsd-v10i13.21222. Disponível em: https://rsdjournal.org/index.php/rsd/article/view/21222. Acesso em: 26 nov. 2024.

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Section

Agrarian and Biological Sciences