ISSR markers are effective to access genetic diversity in germplasm of wheat (Triticum aestivum)

Authors

DOI:

https://doi.org/10.33448/rsd-v9i12.10648

Keywords:

Genetic structure; Genetic resources; Molecular markers.

Abstract

Know the genetic variability between wheat cultivars (Triticum aestivum) is of great importance for breeding programs. Thus, this work aimed to use ISSR markers to access genetic diversity between contrasting wheat accessions. For this, 32 accessions of wheat and one access of triticale from the Active Bank of Wheat Germplasm of the Institute of Rural Development of Paraná (IDR-Paraná) were evaluated. A total of 66 polymorphic loci were amplified from 10 ISSR primers with an average loci variation per primer of 6.6. Genetic similarity ranged from 0.29 to 0.93, with an average of 0.57. The resulting dendrogram from the data was divided into four groups, in which it was observed that the genotypes LD 111202 and LD 111203 showed a high level of genetic similarity among themselves. The Bayesian cluster analysis formed four groups, partially in agreement with the UPGMA hierarchical cluster. ISSR markers were able to discriminate morphologically distinct and similar accessions and provide consistent information on the genetic variability between wheat genotypes that will help in breeding programs.

References

Abou-Deif, M. H., Rashed, M., Sallam, M., Mostafa, E., Ramadan, W. (2013). Characterization of Twenty Wheat Varieties by ISSR Markers. Middle-East, Journal of Scientific Research, 15 (2), 168-175.

Ammiraju, J. S. S., Dholakia, B. B., Santra, D. K., Singh, H., Lagu, M. D., Tamhankar, S. A., Dhaliwal, H. S., Rao, V. S., Gupta, V. S., Ranjekar, P. K. (2001). Identification of inter simple sequence repeat (ISSR) markers associated with seed size in wheat. Theoretical and Applied Genetics, 102 (5), 726-732.

Carvalho, A., Lima-Brito, J., Maçãs, B., Guedes-Pinto, H. (2009). Genetic diversity and variation among botanical varieties of old portuguese wheat cultivars revealed by ISSR assays. Biochemical Genetics, 47 (3-4), 276-294.

Chowdhury, R. M. V. K., Kundu S. J. S. & Jain, R. K. (2008). Applicability of ISSR markers for genetic diversity evaluation in Indian bread wheat genotypes of known origin. Environmental Ecology, 26, 126-131.

Earl, D. A. & von Holdt, B. M. (2012). Structure Harvester: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conservation Genetics Resources, 4, 359-361.

El-Assal, S. E. D. & Gaber, A. (2012). Discrimination capacity of RAPD, ISSR and SSR markers and of their effectiveness in establishing genetic relationship and diversity among Egyptian and Saudi wheat cultivars. American Journal of Applied Sciences, 9 (5), 724-735.

Etminan, A., Pour-Aboughadareh, A., Mohammadi, R., Ahmadi-Rad, A., Noori, A., Mahdavian, Z., Moradi, Z. (2017). Evaluation of genetic diversity in a mini core collection of Iranian durum wheat germplasms. Journal of animal and Plant Sciences, 27, 1582-1587.

Eujayl, I., Sorrells, M., Baum, M., Wolters P., Powell W. (2001). Assessment of genotypic variation among cultivated durum wheat based on EST-SSRs and genomic SSRs. Euphytica, 119 (1), 39-43.

Evanno, G., Regnaut, S. & Goudet, J. (2005). Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular ecology, 14 (8), 2611–2620.

Etminan, A., Pour-Aboughadareh, A., Mohammadi, R., Ahmadi-Rad, A., Noori, A., Mahdavian, Z. & Moradi Z. (2016). Applicability of start codon targeted (SCoT) and inter-simple sequence repeat (ISSR) markers for genetic diversity analysis in durum wheat genotypes. Biotechnology & Biotechnological Equipment, 30 (6), 1075-1081.

Faleiro, F. G. (2007). Marcadores genético-moleculares aplicados aos programas de conservação e uso de recursos genéticos. Planaltina: Embrapa Cerrados.

Ghazalli, M. N., Yunus M. F. & Mohammad, A. L. (2015). Assessment of genetic relationships within Bouea (Anacardiaceae) accessions in Peninsular Malaysia using Inter Simple Sequence Repeats (ISSR) markers. African Journal of Biotechnology, 14 (2), 76-85.

Igrejas, G. & Branlard, G. (2020). The Importance of Wheat. In: Igrejas G., Ikeda T., Guzmán C. (eds). Wheat Quality For Improving Processing And Human Health. Springer Nature Switzerland AG.

Jesus, A. A. de, Bueno, L. G., Vega, W. H. O., & Diniz, F. M. (2020). Moleculares tools in genetic breeding of Megathyrsus maximus for semiarid region: a review. Research, Society and Development, 9(10), e7839108675.

Saleh, O.M., Hamiedeldin, N., Khafaga A.F., Rashad, M., Shoaib, R.M. (2017). Molecular, Morphological and Anatomical Characterization for Some Egyptian Durum Wheat. Life Science Journal, 14(2), 91-104.

Khan, M. K., Pandey, A., Choudhary, S., Hakki, E. E, Akkaya, M. S., Thomas, G. (2014). From RFLP to DArT: molecular tools for wheat (Triticum spp.) diversity analysis. Genetic Resources and Crop Evolution, 61 (5), 1001-1032.

Mangini, G., Taranto, F., Giove, S., Gadaleta, A., Blanco, A. (2010). Identification of Durum Wheat Cultivars by a Minimum Number of Microsatellite Markers. Cereal Research Communications, 38 (2), 155-162.

Mattioni, C., Casasoli, M., Gonzalez, M., Ipinza, R., Villani, F. (2002). Comparison of ISSR and RAPD markers to characterize three chilean nothofagus species. Theoretical and Applied Genetics, 104 (6-7), 1064-1070.

Michelmore, R. W., Paran, I., Kesseli, R. V. (1991). Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. Proceedings of the National Academy of Sciences, 88 (21), 9828-9832.

Najaphy, A., Parchin, R. A., Farshadfar, E. (2012). Comparison of phenotypic and molecular characterizations of some important wheat cultivars and advanced breeding lines. Australian Journal of Crop Science, 6 (2), 326-332.

Nagaoka, T., & Ogihara, Y. (1997). Applicability of Inter-Simple Sequence Repeat polymorphisms in wheat for use as DNA markers in comparison to RFLP and RAPD markers. Theoretical and Applied Genetics, 94 (5), 597-602.

Nazarzadeh, Z., Onsori, H., & Akrami, S. (2020). Genetic Diversity of Bread Wheat (Triticum aestivum L.) Genotypes Using RAPD and ISSR Molecular Markers, Journal of Genetic Resources, 6 (1), 69-76.

Pritchard, J. K., Stephens, M., & Donnelly, P. (2000). Inference of population structure using multilocus genotype data. Genetics, 155 (2), 945–959.

Ramasamy, R. K., Ramasamy, S., Bindroo, B. B., Naik, V. G. (2014). Structure Plot: a program for drawing elegant STRUCTURE bar plots in user friendly interface. Springer Plus, 3 (1), 431.

Rizkalla, A. A., Attia, S. A. A., El-Hady, E. A. A. A., Hanna, N. S.; Nasseef, J. E. (2012). Genetic diversity based on ISSR and protein markers associated with earliness trait in wheat. World Applied Sciences Journal, 20 (1), 23-33.

Rolf, F. J. (2000). NTSYS pc: numerical taxonomy and multivariate analysis system. Version 2.1. New York: Exeter Software.

Shaygan, N., Etminan, A., Majidi Hervan, I., Azizinezhad R., Mohammadi, R. (2020). The study of genetic diversity in a minicore collection of durum wheat genotypes using agro-morphological traits and molecular markers. Cereal Research Communications, https://doi.org/10.1007/s42976-020-00073-6.

Sofalian, O., Chaparzadeh,N., Javanmard, A., Hejazi, M.S. (2008). Study the genetic diversity of Wheat Landraces from Northwest of Iran Based on ISSR Molecular Markers. International Journal of Agriculture & Biology, 10 (4), 465–468.

USDA. United States Department of Agriculture. Recuperado de < https://www.fas.usda.gov /data/grain-world-markets-and-trade>

.

Varsha, Y., Pardeep, K. & Meenu, G. (2018). Evaluation of genetic diversity in drought tolerant and sensitive varieties of wheat using ISSR markers, Electronic Journal of Plant Breeding, 9 (1), 146-153.

Weising, K., Nybom H., Pfenninger, M., Wolff, K., Kahl, G. (2005). DNA fingerprinting in plants: principles, methods, and applications. (2a ed.), CRC Press, Taylor & Francis Group, Boca Raton.

Williams, J. G., Kubelik, A. R., Livak, K. J., Rafalski, J. A., Tingey, S. V. (1990). DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Reserch, 18 (22), 6531-5.

Yang, W., Oliveira, A. C., Godwin, I., Schertz, K., Bennetzen, J. L. (1996). Comparison of DNA marker technologies in characterizing plant genome diversity: variability in Chinese sorghums. Crop Science, 36 (6), 1669-1676.

Zamanianfard, Z., Etminan, A., Mohammadi, R., Shooshtari, L. (2015). Evaluation of molecular diversity of durum wheat genotypes using ISSR markers. Biological Forum – An International Journal, 7 (1), 214-218.

Zeb, B., Khan, I., Ali, S., Bacha, S., Mumtaz, S., Swati, Z. (2009). Study on genetic diversity in Pakistani wheat varieties using simple sequence repeat (SSR) markers. African Journal of Biotechnology, 8 (17), 4016-4019.

Zhu, Y., Hu, J., Han, R., Wang, Y., Zhu S. (2011). Fingerprinting and identification of closely related wheat (Triticum aestivum L.) cultivars using ISSR and fluorescence-labeled TP-M13-SSR markers. Australian Journal of Crop Science, 5 (7), 846-850.

Published

13/12/2020

How to Cite

POLIDO, P. B. .; BONACINA, C.; ITO, . T. M. .; GARBÚGLIO, D. D. .; SOUZA, S. G. H. de . ISSR markers are effective to access genetic diversity in germplasm of wheat (Triticum aestivum). Research, Society and Development, [S. l.], v. 9, n. 12, p. e2991210648, 2020. DOI: 10.33448/rsd-v9i12.10648. Disponível em: https://rsdjournal.org/index.php/rsd/article/view/10648. Acesso em: 23 apr. 2024.

Issue

Section

Agrarian and Biological Sciences